Truvari
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truvari package
Truvari
Index
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Index
A
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B
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C
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E
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F
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G
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H
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L
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M
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O
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P
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Q
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R
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S
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T
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U
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V
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W
A
allele_freq_annos() (in module truvari)
B
bed_ranges() (in module truvari)
Bench (class in truvari)
benchdir_count_entries() (in module truvari)
BenchOutput (class in truvari)
build_anno_tree() (in module truvari)
build_match() (truvari.Matcher method)
build_matrix() (truvari.Bench method)
C
calc_af() (in module truvari)
calc_hwe() (in module truvari)
calc_performance() (truvari.StatsBox method)
calc_score() (truvari.MatchResult method)
check_refine_candidate() (truvari.Bench method)
check_vcf_index() (in module truvari)
chunker() (in module truvari)
clean_out() (truvari.StatsBox method)
close_outputs() (truvari.BenchOutput method)
cmd_exe() (in module truvari)
compare_calls() (truvari.Bench method)
compare_chunk() (truvari.Bench method)
compress_index_vcf() (in module truvari)
coords_within() (in module truvari)
count_entries() (in module truvari)
create_pos_haplotype() (in module truvari)
E
entry_boundaries() (in module truvari)
entry_distance() (in module truvari)
entry_gt_comp() (in module truvari)
entry_is_filtered() (in module truvari)
entry_is_present() (in module truvari)
entry_reciprocal_overlap() (in module truvari)
entry_same_variant_type() (in module truvari)
entry_seq_similarity() (in module truvari)
entry_shared_ref_context() (in module truvari)
entry_size() (in module truvari)
entry_size_similarity() (in module truvari)
entry_to_hash() (in module truvari)
entry_to_key() (in module truvari)
entry_variant_type() (in module truvari)
F
file_zipper() (in module truvari)
filter_call() (truvari.Matcher method)
flush() (truvari.LogFileStderr method)
G
get_gt() (in module truvari)
get_scalebin() (in module truvari)
get_sizebin() (in module truvari)
get_svtype() (in module truvari)
GT (class in truvari)
H
HEADERMAT (in module truvari)
help_unknown_cmd() (in module truvari)
L
LogFileStderr (class in truvari)
M
make_match_params() (truvari.Matcher static method)
make_match_params_from_args() (truvari.Matcher static method)
make_temp_filename() (in module truvari)
Matcher (class in truvari)
MatchResult (class in truvari)
module
truvari
msa2vcf() (in module truvari)
O
opt_gz_open() (in module truvari)
optimize_df_memory() (in module truvari)
overlap_percent() (in module truvari)
overlaps() (in module truvari)
P
param_dict() (truvari.Bench method)
performance_metrics() (in module truvari)
phab() (in module truvari)
Q
QUALBINS (in module truvari)
R
reciprocal_overlap() (in module truvari)
ref_ranges() (in module truvari)
region_filter() (in module truvari)
restricted_float() (in module truvari)
restricted_int() (in module truvari)
run() (truvari.Bench method)
S
seqsim() (in module truvari)
setup_logging() (in module truvari)
sizesim() (in module truvari)
StatsBox (class in truvari)
SV (class in truvari)
SZBINMAX (in module truvari)
SZBINS (in module truvari)
T
truvari
module
U
unroll_compare() (in module truvari)
V
vcf_ranges() (in module truvari)
vcf_to_df() (in module truvari)
W
write() (truvari.LogFileStderr method)
write_json() (truvari.StatsBox method)
write_match() (truvari.BenchOutput method)
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v4.2.1
v4.2.0
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v4.0.0
v3.5.1
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v3.3.0
v3.2.0
v3.1.0
v3.0.1
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